SNP Profiles of PA 56 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
1._NA	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
2._NA	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
3._NA	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
4._NA	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
5._PA_56_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
6._PA_56_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
7._PA_56_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
8._PA_56_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
9._PA_56_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
10._RUQ_32	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
11._PA_56_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
12._RUQ_32	__	__	CT	CC	__	__	CT	__	CC	__	__	TT	CC	__
13._RUQ_32	__	__	__	CC	__	__	CT	__	__	__	__	__	__	__
14._-	AA	AC	__	CC	GG	GG	__	GG	GG	__	GG	AA	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	CC	GG	AA
1._NA	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	CC	GG	AA
2._NA	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	CC	GG	AA
3._NA	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	CC	GG	AA
4._NA	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	CC	GG	AA
5._PA_56_[PER]	__	__	GG	__	__	GG	__	__	__	__	AA	__	GG	AA
6._PA_56_[PER]	__	__	GG	__	__	GG	__	__	__	__	AA	__	GG	AA
7._PA_56_[PER]	__	__	GG	__	__	GG	__	__	__	__	AA	__	GG	AA
8._PA_56_[PER]	__	__	GG	__	__	GG	__	__	__	__	AA	__	GG	AA
9._PA_56_[PER]	__	__	GG	__	__	GG	__	__	__	__	AA	__	GG	AA
10._RUQ_32	__	__	GG	__	__	GG	__	__	__	__	AA	__	GG	AA
11._PA_56_[PER]	__	__	GG	__	__	GG	__	__	__	__	AA	__	GG	AA
12._RUQ_32	__	__	__	__	CC	__	__	__	__	GG	__	CC	GG	__
13._RUQ_32	__	__	GG	TT	__	__	__	__	__	__	__	__	GG	__
14._-	TT	CC	GG	CG	__	GG	GG	GG	AA	GG	AA	GG	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC	GG
1._NA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC	GG
2._NA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC	GG
3._NA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC	GG
4._NA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC	GG
5._PA_56_[PER]	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__	__
6._PA_56_[PER]	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__	__
7._PA_56_[PER]	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__	__
8._PA_56_[PER]	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__	__
9._PA_56_[PER]	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__	__
10._RUQ_32	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__	__
11._PA_56_[PER]	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__	__
12._RUQ_32	__	__	GG	CG	CC	AG	GG	__	__	GG	TT	__	__	GG
13._RUQ_32	__	__	__	CG	__	AG	__	__	__	__	__	__	__	__
14._-	AA	AC	GG	CG	CC	AG	CC	CC	AA	GG	AA	AG	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC	TT
1._NA	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC	TT
2._NA	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC	TT
3._NA	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC	TT
4._NA	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC	TT
5._PA_56_[PER]	__	CC	__	__	__	__	__	__	__	__	__	CC	CC	__
6._PA_56_[PER]	__	CC	__	__	__	__	__	__	__	__	__	CC	CC	__
7._PA_56_[PER]	__	CC	__	__	__	__	__	__	__	__	__	CC	CC	__
8._PA_56_[PER]	__	CC	__	__	__	__	__	__	__	__	__	CC	CC	__
9._PA_56_[PER]	__	CC	__	__	__	__	__	__	__	__	__	CC	CC	__
10._RUQ_32	__	CC	__	__	__	__	__	__	__	__	__	CC	CC	__
11._PA_56_[PER]	__	CC	__	__	__	__	__	__	__	__	__	CC	CC	__
12._RUQ_32	TT	__	__	GG	__	__	__	__	__	__	CT	CC	__	TT
13._RUQ_32	__	__	__	GG	__	__	__	__	__	__	__	__	__	__
14._-	__	GG	__	GG	AA	GG	__	GG	AG	CC	AG	GG	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT	CC
1._NA	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT	CC
2._NA	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT	CC
3._NA	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT	CC
4._NA	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT	CC
5._PA_56_[PER]	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__	__
6._PA_56_[PER]	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__	__
7._PA_56_[PER]	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__	__
8._PA_56_[PER]	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__	__
9._PA_56_[PER]	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__	__
10._RUQ_32	__	CC	__	CT	AC	GG	__	CC	AG	GT	GG	__	__	__
11._PA_56_[PER]	__	CC	__	CT	AC	GG	__	CC	AG	GT	GG	__	__	__
12._RUQ_32	__	CC	CC	CT	AC	__	GG	CC	AG	GT	GG	AG	__	__
13._RUQ_32	GG	__	__	__	__	__	__	CC	AG	__	GG	AG	__	__
14._-	GG	GG	GG	AG	AC	GG	GG	CC	AG	AC	CC	AG	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT	CT
1._NA	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT	CT
2._NA	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT	CT
3._NA	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT	CT
4._NA	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT	CT
5._PA_56_[PER]	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT	CT
6._PA_56_[PER]	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT	CT
7._PA_56_[PER]	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT	CT
8._PA_56_[PER]	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT	CT
9._PA_56_[PER]	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT	CT
10._RUQ_32	AA	CT	__	__	__	__	__	AC	CG	__	__	__	TT	CT
11._PA_56_[PER]	AA	CT	__	__	__	__	__	AC	CG	__	__	__	TT	CT
12._RUQ_32	__	__	__	__	__	__	__	AC	CG	__	__	AA	TT	__
13._RUQ_32	AA	__	__	__	__	__	__	AA	CG	__	__	AA	__	__
14._-	__	AG	AC	AG	AC	AA	__	AC	CG	GG	AT	AA	AA	AG

	85	86	87	88	89	90	91	92	93
_Input profile	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
1._NA	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
2._NA	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
3._NA	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
4._NA	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
5._PA_56_[PER]	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
6._PA_56_[PER]	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
7._PA_56_[PER]	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
8._PA_56_[PER]	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
9._PA_56_[PER]	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
10._RUQ_32	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
11._PA_56_[PER]	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
12._RUQ_32	__	__	AA	CC	CC	TT	__	__	__	X_X	X_X	X_X	X_X	X_X
13._RUQ_32	CC	__	__	__	__	TT	__	__	__	X_X	X_X	X_X	X_X	X_X
14._-	__	AG	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X

Input profile: PA_56_[PER] NA

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

1._PA_56_[PER] NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

2._PA_56_[PER] NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

3._PA_56_[PER] NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._PA_56_[PER] NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

5._PA_56_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 6

Dapeng Zhang, 2016

6._PA_56_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 4

Dapeng Zhang, 2016

7._PA_56_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 3

Dapeng Zhang, 2016

8._PA_56_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 2

Dapeng Zhang, 2016

9._PA_56_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 1

Dapeng Zhang, 2016

10._PA_56_[PER] RUQ_32

96.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._PA_56_[PER]

96.2 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

12._PA_56_[PER] RUQ_32

95.1 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._PA_56_[PER] RUQ_32

84.2 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

14._PA_56_[PER] -

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 76, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP689	48	TcSNP944	49	TcSNP1242	50	TcSNP1383
51	TcSNP547	52	TcSNP776	53	TcSNP1309	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240